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YASS genomic similarity search tool

YASS : genomic DNA/RNA similarity search tool | A cool selection of cool search engines with extra flavours | Scoop.it

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  • Binaries: [built jul 13, 2011]
    • Windows: (the 32bits version with 2 or 4 threads is the most common choice)
      • 32bits: [1,2,4,8] threads
      • 64bits: [1,2,4,8] threads
    • Linux-intel: (a better choice is to directly compile yass on your own computer)
      • 32bits: [1,2,4,8] threads
      • 64bits: [1,2,4,8] threads
    • MacOS-universal: (the 32bits version with 2 or 4 threads is the most common choice)
      • 32bits: [1,2,4,8] threads
      • 64bits: [1,2,4,8] threads
  • Sources:
    • v1.14 [tar.gz, zip, dir] [built nov 22, 2012]
    • v1.15 α1 (not fully tested) [tar.gz, zip, dir] [built jan 29, 2013]
  • Miscellaneous:
    • yass2blast.pl for ≥ v1.14 (convert the -d 1 yass output to "full" blast output, fasta alignment, or axt output): [.pl]
    • seeds.txt (provide some seeds): [.txt]
    • README (yass options are briefly described): [.txt]

Otherwise, old releases can be found in this directory: [dir]
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